Gene Functional Class Analysis


[Up] [Top]

Documentation for package ‘GeneGroupAnalysis’ version 1.2.0

Help Pages

GeneGroupAnalysis-package The Gene Group Analysis package for Gene Functional Class Analysis.
ArrayInfoFun Function that extracts the required information from the data set.
GeneGroupAnalysis The Gene Group Analysis package for Gene Functional Class Analysis.
GeneGrps2AffyGrpsFun Function that translates GO hierarchical tree of gene symbols to a groups of Affymetrix identifiers of interest.
GeneMaxVarFun Function to compute the Affymetrix identifiers with the maximum variability between phenotypes.
GGAdata List containing a collection of gene symbols with their associated GO term and GO hierarchical trees for each ontology
GibbsAllFun.ts Function to compute the Gibb's sampler for the series data design.
GibbsFun.cs Function to compute the Gibb's sampler for the cross-sectional data design.
GibbsNPFun.ts Function to compute the Gibb's sampler for the series data design.
MCMCData.cs Function that computes the required data set objects for the Gibb's sampler under a cross-sectional data design.
MCMCData.ts Function that computes the required data set objects for the Gibb's sampler under a time series data design.
SizeGOAffyGrps Function to compute gene functional classes with a desired size.