BitSeq-package | Bayesian Inference of Transcripts from Sequencing data |
BitSeq | Bayesian Inference of Transcripts from Sequencing data |
estimateDE | Estimate condition mean expression and calculate Probability of Positive Log Ratio(PPLR) |
estimateExpression | Estimate expression of transcripts |
estimateHyperPar | Estimate hyperparameters for DE model using expression samples and joint mean expression |
getDE | Estimate Probability of Positive Log Ratio |
getExpression | Estimate transcript expression |
getGeneExpression | Calculate gene expression or relative within gene expression |
getMeanVariance | Calculate mean and variance of expression samples |
getWithinGeneExpression | Calculate gene expression or relative within gene expression |
loadSamples | Loading and saving expression samples |
parseAlignment | Compute probabilities of alignments |
writeSamples | Loading and saving expression samples |